rs32783208 SNP Detail

Summary

• ID
  rs32783208
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:85879643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTTTAC CTGGGGTGGG
  TTTTCAATGT AACCGTAATG GAGAGGAAAT TATTAGGCCA GCTGGTTAAC CACAGTTATC
  TGAAACTGGA TGGAAGAATT AACCTAGAAG ATGCATAAAG AGGTGAAGGG ATTGGGAAGA
  GTCATGGGAA ATCCAGGCAC CAGACTGGAG CCTTCTTAGA AAGGGAACAT GGAGAGGCTC
  Y
  TCTGTGTGAC CACCAGGAGA AAGTTGGGTC TGTGGAATTG GAGGGCAGAA AATGGGATAA
  AAGCAAAAAA AAAAAAAAAA AAAAAAAGTC GGTAAGCGTA TTCCGAGTAA GACATTCCGG
  AAGCTTAAAA TTAACTTTAT GCCTGCCTGC CTGCCTGCCA CGGGGCCTTT TTTAGAGTAA
  GACACTTGAC TGTTACCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46728638	NES10744720	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32783208					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46728638	NES10744720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:85879643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13322	CpG island 13322	428 bp distal
Rr579285	regulatory region 579285	1217 bp distal
Rr579286	regulatory region 579286	within coordinates
Rr579287	regulatory region 579287	1117 bp proximal
Sh3d19	SH3 domain protein D19	within coordinates
Tssr29770	transcription start site region 29770	1161 bp downstream
Tssr29771	transcription start site region 29771	1100 bp downstream