rs32783540 SNP Detail

Summary

• ID
  rs32783540
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137445134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCC CAGCTGAAGA GTTGTTCTGA
  M
  GGCGTCCCTG AGCAGGGAGG AGCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45693538	mCV23446140	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A
ss147617647	ENSMUSSNP3702375	ENSEMBL	ENSEMBL_Sanger	f	SNP			A	A
ss321366739	CHEV_4_137273738	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32783540					SNP	C	C	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137445134 () rs orientation: forward

Symbol	Name	Function Class
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	1667 bp proximal
Rr96794	regulatory region 96794	1911 bp distal
Rr100343	regulatory region 100343	1466 bp proximal
Tssr39776	transcription start site region 39776	468 bp downstream
Tssr39777	transcription start site region 39777	442 bp downstream
Tssr39778	transcription start site region 39778	1391 bp upstream
Tssr39779	transcription start site region 39779	1421 bp upstream
Tssr39780	transcription start site region 39780	1697 bp upstream
Tssr39781	transcription start site region 39781	1862 bp upstream