rs32783590 SNP Detail

Summary

• ID
  rs32783590
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55420299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCCAGGTA GGTAATAAGA AAGACCAAGA AAGGCTGGAA
  GGTTTGCAAT GTGCCACCCA GGGCGAGGGA CACAGGACAC AGAACACCTG CAAGGGCAGA
  W
  GAACAGGTGT AAGTCGCTTG GGGAGGAGCA GGGCTTTGCA GCTTCAGACT TGTGTGTGGA
  AGGGTTCATT CTCGTGGTTG GCACAGCTCA TCAAGACACA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss49399757	NES12785302	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs32783590					SNP	T	T	T	T	T	T	A	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49399757	NES12785302	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55420299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi265	CpG island 265	633 bp proximal
Gm8531	predicted gene 8531	55 bp downstream
Rr16609	regulatory region 16609	1902 bp proximal
Rr33932	regulatory region 33932	1909 bp proximal