rs32784198 SNP Detail

Summary

• ID
  rs32784198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:85880097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACTTAAC TGCTGCGTAA
  ATAATTCAGT ACCATGAAAA AGTTTGCAAA GTTGTGCCTT GGTTGCTTAC AGATTTTAAA
  AGTGCATAAG TACCTTGGAT TCTTGGTACC TTTTAGAAGA AAGTCTCCCT CTTACAGAGG
  ACTGCACCAT GGAGAGCAGT GTCGGAATTT AAACTAAATA TGACCCAGAT ACAGGTTCAA
  Y
  GGTTCTTCAG TGTGTTTTTC CCCCCAAGGC CAGCACAAAT GTTACTTTTG TAACTTTTTA
  CTAGTTCCAT AATGTCTGAA GACAAGGCCT AGTCTAGGCT CTGTGATAAT AGTTTGCCGA
  GATTTGGTAG CGTCTGCACC CAGAAATAAG TGTTTTCAGC TCTCTTACCC TTAACATGGC
  TTCCTTCATG AAGGGGCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46728650	NES10744728	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32784198					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46728650	NES10744728	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:85880097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13322	CpG island 13322	882 bp distal
Rr579285	regulatory region 579285	1671 bp distal
Rr579286	regulatory region 579286	415 bp distal
Rr579287	regulatory region 579287	663 bp proximal
Sh3d19	SH3 domain protein D19	within coordinates
Tssr29770	transcription start site region 29770	1615 bp downstream
Tssr29771	transcription start site region 29771	1554 bp downstream