rs32786566 SNP Detail

Summary

• ID
  rs32786566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86400167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTA AATTTAGCTC TTCTATTCCG
  R
  TCTCTGCCCG GCCCTTGCCC TGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45194008	mCV24368257	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		G
ss49435721	NES12837479	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	A	A		G	G	A	A	G	G	A	G	G
ss144878419	ENSMUSSNP3899282	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32786566					SNP	A	A	A	G	G	A	A	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435721	NES12837479	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86400167 () rs orientation: forward

Symbol	Name	Function Class
Cpgi508	CpG island 508	within coordinates
Gm41907	predicted gene, 41907	within coordinates
Rpl30-ps6	ribosomal protein L30, pseudogene 6	1214 bp upstream
Rr371652	regulatory region 371652	within coordinates
Rr396149	regulatory region 396149	1646 bp downstream
Rr396150	regulatory region 396150	773 bp downstream
Rr414594	regulatory region 414594	869 bp distal
Rr414595	regulatory region 414595	252 bp proximal
Tssr7756	transcription start site region 7756	1674 bp downstream
Tssr7757	transcription start site region 7757	1082 bp upstream