rs32786892 SNP Detail

Summary

• ID
  rs32786892
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:56702333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTGCCTT CCTAGAAAAT
  CCAGCTAGAT ACTGGCTGGC CCCTCCAAGT AACATCCAAG CTAAGATCAA GGCTTCAACG
  CCCAAAGGTT TGTACTTTGA ATGCCAGGGG AAAGTGTATA TGGGCTTCAT CTGTACAGAA
  GAGAACTGGA AGGATTCAAG ATCAATCAGC AGCCAAAAGT TGCTTCCTTG AGGAGGAAGA
  R
  CCTGTGCTGG AGATAAAGAC TTAGCAAGGG AACTCTGGAA TGTTTCCTGA AGCAGCCAGT
  ACAGGCCCAG CAGAGACTCA CCGGAAAGGG GATACACCGA GTGAGACAGG CTTGACATCA
  ATGGCCAAAA GGTGGGATGG ATATGCCCGG CTAGTGGGCC TGGTTATGCC CCTCCCATCA
  ATCCCCAGCC TCTTGAGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47712972	NES11323973	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32786892					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47712972	NES11323973	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56702333 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21799	CpG island 21799			304 bp proximal
Gm31586	predicted gene, 31586			1943 bp upstream
Lingo1	leucine rich repeat and Ig domain containing 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr679503	regulatory region 679503			271 bp proximal
Rr679504	regulatory region 679504			1079 bp proximal
Rr679505	regulatory region 679505			1220 bp proximal
Tssr89733	transcription start site region 89733			717 bp downstream
Tssr89734	transcription start site region 89734			1171 bp downstream
Tssr89735	transcription start site region 89735			1221 bp downstream
Tssr89736	transcription start site region 89736			1823 bp downstream