rs32787714 SNP Detail

Summary

• ID
  rs32787714
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:56702438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCGG AAAGGGGATA CACCGAGTGA
  R
  ACAGGCTTGA CATCAATGGC CAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47712974	NES11323974	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32787714					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47712974	NES11323974	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56702438 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21799	CpG island 21799			199 bp proximal
Gm31586	predicted gene, 31586			1838 bp upstream
Lingo1	leucine rich repeat and Ig domain containing 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr679503	regulatory region 679503			166 bp proximal
Rr679504	regulatory region 679504			974 bp proximal
Rr679505	regulatory region 679505			1115 bp proximal
Rr679506	regulatory region 679506			1956 bp proximal
Tssr89733	transcription start site region 89733			612 bp downstream
Tssr89734	transcription start site region 89734			1066 bp downstream
Tssr89735	transcription start site region 89735			1116 bp downstream
Tssr89736	transcription start site region 89736			1718 bp downstream