rs32788334 SNP Detail

Summary

• ID
  rs32788334
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135693570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAT GACCTGGCTC CTCTAGGAGA
  S
  GATCCTCGGC CCTCCCCCAC TTCTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45194027	mCV23239859	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss145545548	ENSMUSSNP5421326	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss319993139	CHEV_1_137662409	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32788334					SNP	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135693570 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	within coordinates
Gm70736	predicted gene, 70736	837 bp downstream
Phlda3	pleckstrin homology like domain, family A, member 3	287 bp upstream
Rr372092	regulatory region 372092	within coordinates
Rr419268	regulatory region 419268	1605 bp distal
Rr419269	regulatory region 419269	within coordinates
Tssr223	transcription start site region 223	238 bp upstream
Tssr224	transcription start site region 224	357 bp upstream
Tssr8974	transcription start site region 8974	253 bp upstream
Tssr8975	transcription start site region 8975	375 bp upstream
Tssr8976	transcription start site region 8976	386 bp upstream
Tssr8977	transcription start site region 8977	405 bp upstream
Tssr8978	transcription start site region 8978	409 bp upstream
Tssr8979	transcription start site region 8979	1977 bp upstream