rs32788335 SNP Detail

Summary

• ID
  rs32788335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:153363231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGA GCCGCGGAGG CCGGCGTCGG
  Y
  CCGCAGCAAT GAGCCCGCGT CCGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45194028	mCV25366581	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss145743750	ENSMUSSNP2233040	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32788335					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153363231 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi867	CpG island 867			within coordinates
Dhx9	DExH-box helicase 9			Intron
				Noncoding-Transcript-Variant
Rr396394	regulatory region 396394			35 bp upstream
Rr396395	regulatory region 396395			1613 bp upstream
Rr420681	regulatory region 420681			1952 bp distal
Rr420682	regulatory region 420682			within coordinates
Rr420683	regulatory region 420683			1232 bp distal
Rr420684	regulatory region 420684			29 bp proximal
Rr420685	regulatory region 420685			113 bp proximal
Rr420686	regulatory region 420686			1435 bp proximal
Tssr9459	transcription start site region 9459			564 bp downstream
Tssr9460	transcription start site region 9460			291 bp upstream
Tssr14270	transcription start site region 14270			154 bp downstream
Tssr14271	transcription start site region 14271			186 bp downstream
Tssr14272	transcription start site region 14272			199 bp downstream