rs32788424 SNP Detail

Summary

• ID
  rs32788424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56703378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCACGCGGC GCTGCCGGCG
  GGCTGACACC CTAGCTCCCC GCCTGCACCC CTGCGGCCCC AGCCCAGCCG CAGCATCCAG
  ACCCAGCCAC ACTTACCATC AGAGCTAGTC GTCCGCGCGG GGCTCTGCTC TGGGCCGGCA
  TCACCAGGCT GGGCTCGCCT CCGATCCCAG CTCCAGCTTG GGTTCTCGCT CCGCAGGGCT
  Y
  AGCTCCGAGA TGGTGGCAGC AGCAACCAAC GAAGCAGAAA AGGCGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGCAAAAGA GTGTATGTGC ACAAGAGAGC
  GCGCACGACG TGTGCGCGGC AGAGCCCCCG CGCTCCCCTG CGCGCCCGGC TCCTGCCTCC
  TGCTCTCCAC GCTGCGATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47712984	NES11323981	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32788424					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47712984	NES11323981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56703378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21799	CpG island 21799	within coordinates
Gm31586	predicted gene, 31586	898 bp upstream
Lingo1	leucine rich repeat and Ig domain containing 1	within coordinates
Rr679503	regulatory region 679503	within coordinates
Rr679504	regulatory region 679504	34 bp proximal
Rr679505	regulatory region 679505	175 bp proximal
Rr679506	regulatory region 679506	1016 bp proximal
Rr679507	regulatory region 679507	1713 bp proximal
Tssr89733	transcription start site region 89733	270 bp upstream
Tssr89734	transcription start site region 89734	126 bp downstream
Tssr89735	transcription start site region 89735	176 bp downstream
Tssr89736	transcription start site region 89736	778 bp downstream