rs32788426 SNP Detail

Summary

• ID
  rs32788426
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56703823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCG GGCGTTCCCG CTCCTCCGCT
  R
  TGCCCTGCCC CGTCGTGGCC GCGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47712986	NES11323982	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32788426					SNP	G	G	G	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47712986	NES11323982	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56703823 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21799	CpG island 21799	within coordinates
Gm31586	predicted gene, 31586	453 bp upstream
Lingo1	leucine rich repeat and Ig domain containing 1	71 bp upstream
Rr679503	regulatory region 679503	412 bp distal
Rr679504	regulatory region 679504	271 bp distal
Rr679505	regulatory region 679505	within coordinates
Rr679506	regulatory region 679506	571 bp proximal
Rr679507	regulatory region 679507	1268 bp proximal
Tssr89733	transcription start site region 89733	715 bp upstream
Tssr89734	transcription start site region 89734	296 bp upstream
Tssr89735	transcription start site region 89735	220 bp upstream
Tssr89736	transcription start site region 89736	333 bp downstream