rs32788581 SNP Detail

Summary

• ID
  rs32788581
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165955705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTAGCAGT GGGTTTAGAA CAGGCTCATG CTGTGACACA
  AGGACCTAGA GAAAACCATC TCCCGCAGGA GGCTGGCTCC TCAAAGCACT TTCTGAAAAT
  W
  ATCCAAATCA GCACATTTGG AACGAACTTA ACTTTACCTC ATAGCATCTT GGAGGAAGCC
  TAGGAAAGGA AAATACCAAT TATACAGAAC AGGTTGGCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45194148	mCV23028197	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	T
ss146013171	ENSMUSSNP3108934	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32788581					SNP	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165955705 () rs orientation: forward

Symbol	Name	Function Class
Rr28891	regulatory region 28891	within coordinates
Rr372394	regulatory region 372394	970 bp downstream
Styxl2	serine/threonine/tyrosine interacting like 2	238 bp upstream
Tssr9858	transcription start site region 9858	1136 bp downstream
Tssr14809	transcription start site region 14809	1276 bp upstream
Tssr14810	transcription start site region 14810	915 bp upstream
Tssr14811	transcription start site region 14811	232 bp upstream
Tssr14812	transcription start site region 14812	216 bp upstream
Tssr14813	transcription start site region 14813	195 bp upstream