rs32788733 SNP Detail

Summary

• ID
  rs32788733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45578266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAGAACG CTCAATCTCT
  GCTTCTCTTT CTCTCCCACG TGTATATGTA GTAATCCCGC TGCCAGCGGG CCACACAGTA
  GGCCTCTGGG TGACCTCCTC TGCCCATACT ATCTAGCAGG GCAGCAAGCA GGTCTCTGTA
  TGCCTACAGT CTGCCCATGT GGCATGGCAG TGGGTGAGTC TCTGAGAAGT TTTTTCCTGC
  Y
  CACACTGCAT GGTATGGTGG CATGTGGGCC TCTGTGTGTC TTGGCCTACT ATGCCATGCA
  GGAGGCGGCA AGTCTCTGGG TGTCTTTTCC TGCTTACCCC AAATGTTATA ATTATACATG
  TAACCATTGC CATAGCTGAG GTTATACTAA ACTGTATAAA CTGGGGGAAA TCATCTTTCT
  CGCTTTAGCC TCCTGAAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47713101	NES10258251	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32788733					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47713101	NES10258251	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45578266 () rs orientation: forward

Symbol	Name	Function Class
D5Ertd615e	DNA segment, Chr 5, ERATO Doi 615, expressed	within coordinates
Gm71490	predicted gene, 71490	within coordinates
Rr611049	regulatory region 611049	597 bp distal
Rr611050	regulatory region 611050	940 bp distal
Rr611051	regulatory region 611051	664 bp distal
Rr611052	regulatory region 611052	287 bp distal