rs32789274 SNP Detail

Summary

• ID
  rs32789274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56704769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTCCTG GCCCAAGGTG
  GACTCCCCGT CTATGTGACC TTGGGCAGAT GCTTACACTT CTTTGAGCCT CAGTTTACCT
  AAGAAAGACA TGGGCTTCCA TCATCTCTAG CGCCTTGTCT AGCTCTGATA TGTTAGCTGC
  TCTGAGGACA TCGGGGTGCT GGAGTCCAGC CTCTTCAGGT CCTGGTTGCC CTGTCTCTTG
  Y
  TCTGACTCTT CTCCCATCTC ATCCAAACAG GGGAAAGGCA AAAGTGAGCA GAACCGGAAT
  CTACTACGCT ACAGCACTCT ACAAAACAGC ATCTCCCTGG ACTTTCCTGT TCATGGCTCC
  TGCAGCCCAA TTCTGCAGAG TATTGTTGAT TTCACCCAGC TGGTCCCTAG GCATCTAATT
  TGTTGCCCCC AACTTGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47712994	NES11323838	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32789274					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47712994	NES11323838	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56704769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21799	CpG island 21799	55 bp distal
Gm31586	predicted gene, 31586	within coordinates
Gm47235	predicted gene, 47235	1477 bp downstream
Lingo1	leucine rich repeat and Ig domain containing 1	1017 bp upstream
Rr679503	regulatory region 679503	1358 bp distal
Rr679504	regulatory region 679504	1217 bp distal
Rr679505	regulatory region 679505	133 bp distal
Rr679506	regulatory region 679506	354 bp distal
Rr679507	regulatory region 679507	322 bp proximal
Tssr89733	transcription start site region 89733	1661 bp upstream
Tssr89734	transcription start site region 89734	1242 bp upstream
Tssr89735	transcription start site region 89735	1166 bp upstream
Tssr89736	transcription start site region 89736	530 bp upstream