rs32789280 SNP Detail

Summary

• ID
  rs32789280
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56705158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACTTGTG CTAGGTGCAG
  TAGTATCAGA CACTTCCATC AAACAGAAAA CGAGGAAGCA GGTGGTATAA TAGAACTGTT
  GGGGTGGCAG GAGAGCCCAG GCAGCTTCCT GGAGGAGGTG GTGGTGAATC CATCAGAGCG
  TGAGCTGGAG GTGGCCAGGC GAAAAGGGAG ACCAGACGGG GAGGAATAGA AATCTCGTTC
  W
  GAAAGAAACC TAAGGGAAGA CCAGGAAGTG GGAAATAAGG AATGCTGTGT GTGTTATTGA
  GAAACTTTGT ATTGAGTTTC AATTCTGGGG CAGCAGCAAG ACAGCTTTGC TCGATCTAGG
  TAGGAGTCCG GTTCTCACCT CCCACCTTAA ACTGCCTTTG CAGGAAGGCG CTTCTCTTGC
  TTAAGCTCTC TCCAGCCTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47713000	NES11323841	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32789280					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47713000	NES11323841	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56705158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21799	CpG island 21799	444 bp distal
Gm31586	predicted gene, 31586	within coordinates
Gm47235	predicted gene, 47235	1088 bp downstream
Lingo1	leucine rich repeat and Ig domain containing 1	1406 bp upstream
Rr679503	regulatory region 679503	1747 bp distal
Rr679504	regulatory region 679504	1606 bp distal
Rr679505	regulatory region 679505	522 bp distal
Rr679506	regulatory region 679506	743 bp distal
Rr679507	regulatory region 679507	within coordinates
Tssr89734	transcription start site region 89734	1631 bp upstream
Tssr89735	transcription start site region 89735	1555 bp upstream
Tssr89736	transcription start site region 89736	919 bp upstream