rs32789555 SNP Detail

Summary

• ID
  rs32789555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45576384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGAAAC AGGAAAGACC
  TACATCCAGA ACAAATGCCA TATGTCATAG AGCTGAACAC TGCTGGTGAC TAATTATAAA
  TCTCACTGTC ATTAATTACA TACTTTTCAA GTAGCTTGGG GTTCAGCAGG ATTTGGGTCC
  TTCATATATG ATACCAAGTT AGGTGGCATC TTTCCCAGGC TATCACGACT GCTTTGTGAC
  R
  ATTACTTCTA CTGAATGAGA CCCCCACACT CATCCCATGA ATCTGTGAAA TGACTCATTA
  TGTTTCTTCT AAAATTACAA AGAGAAGAAA GCCTAGCATC ACCCCCGGAA CACAATAGTT
  CTTTATAAAC TGTAGTTATG CGCATAGTGA ATGCTTACAC CCTTAAAATA GTTACCTTAT
  TTCTAATTAT ATGTCTATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47713103	NES10258384	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32789555					SNP	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47713103	NES10258384	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45576384 () rs orientation: forward

Symbol	Name	Function Class
D5Ertd615e	DNA segment, Chr 5, ERATO Doi 615, expressed	within coordinates
Gm71490	predicted gene, 71490	1042 bp upstream
Rr611049	regulatory region 611049	697 bp proximal
Rr611050	regulatory region 611050	921 bp proximal
Rr611051	regulatory region 611051	1197 bp proximal
Rr611052	regulatory region 611052	1286 bp proximal