rs32789561 SNP Detail

Summary

• ID
  rs32789561
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45575616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTA CTAAACCTCT ATGGTTCTCA
  R
  TCCTTGTCAT GCTGCCTCGA CAACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45779862	mCV23485814	ABI	CRAMUS_MOUSE	f	SNP		A	G						G
ss47713109	NES10258381	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	A	G	G	G		G	G	G	G		A
ss148351269	ENSMUSSNP3620887	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss321526907	CHEV_5_45809513	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32789561					SNP	A	A	G	G	G	A	G	A	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47713109	NES10258381	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45575616 () rs orientation: forward

Symbol	Name	Function Class
D5Ertd615e	DNA segment, Chr 5, ERATO Doi 615, expressed	within coordinates
Gm71490	predicted gene, 71490	1810 bp upstream
Rr611049	regulatory region 611049	1465 bp proximal
Rr611050	regulatory region 611050	1689 bp proximal
Rr611051	regulatory region 611051	1965 bp proximal