rs32789854 SNP Detail

Summary

• ID
  rs32789854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56705775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTCTTG AGTTTGAGGC
  CAGCCTGATC TATGAATCGA GTTCCAAATG GGGGTGGGGG ATGGGGACCT AAGGGAAATA
  ACACAGAAGA GTAAGAGTAA ATCAGACCAC AGTGGCATTT GCCCTCTGTC TTTTTCCTTT
  CCTGTCTCTA AGCCTGGCTC TGTGGCCCCT CCTAAAGTCC CTTCCTGTCT CCATTTTCTC
  Y
  TTCTCTGGCC CCTTTTCCTC TTCCTTCCCA TCAGACTTCC CAGAGCCCCC AGGGAGATGA
  GCTCATGACT GCTGGCTCTG GCTCCACACA CCTCCTGAGG AGTCACCCAG GGCATCCAGG
  TGGCCCAAGG GAAGCAAACA GAGACAAACA GCCATTTCCC AGGGGCCCTG CAATCCAAGC
  AGAGAAACAG CTTGTGTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47713004	NES11323725	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32789854					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47713004	NES11323725	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56705775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21799	CpG island 21799	1061 bp distal
Gm31586	predicted gene, 31586	84 bp downstream
Gm47235	predicted gene, 47235	471 bp downstream
Rr679505	regulatory region 679505	1139 bp distal
Rr679506	regulatory region 679506	1360 bp distal
Rr679507	regulatory region 679507	259 bp distal
Tssr89736	transcription start site region 89736	1536 bp upstream