rs32789858 SNP Detail

Summary

• ID
  rs32789858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56705899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCTTTT TCCTTTCCTG
  TCTCTAAGCC TGGCTCTGTG GCCCCTCCTA AAGTCCCTTC CTGTCTCCAT TTTCTCCTTC
  TCTGGCCCCT TTTCCTCTTC CTTCCCATCA GACTTCCCAG AGCCCCCAGG GAGATGAGCT
  CATGACTGCT GGCTCTGGCT CCACACACCT CCTGAGGAGT CACCCAGGGC ATCCAGGTGG
  Y
  CCAAGGGAAG CAAACAGAGA CAAACAGCCA TTTCCCAGGG GCCCTGCAAT CCAAGCAGAG
  AAACAGCTTG TGTCCCCATC CATTTATCCT ACTTCTCCTG TCCTGGAAAC CACAGACGTT
  TATGTATAAG CTTAGGAATC ATTGCTTCCT GCTTTGCAAT GCAATCCCCA CATCTAACAC
  ACTTTCTCTA GCTTTTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47713008	NES11323727	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32789858					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47713008	NES11323727	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56705899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21799	CpG island 21799	1185 bp distal
Gm31586	predicted gene, 31586	208 bp downstream
Gm47235	predicted gene, 47235	347 bp downstream
Rr679505	regulatory region 679505	1263 bp distal
Rr679506	regulatory region 679506	1484 bp distal
Rr679507	regulatory region 679507	383 bp distal
Tssr89736	transcription start site region 89736	1660 bp upstream