rs32789860 SNP Detail

Summary

• ID
  rs32789860
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56706124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCATTTC CCAGGGGCCC
  TGCAATCCAA GCAGAGAAAC AGCTTGTGTC CCCATCCATT TATCCTACTT CTCCTGTCCT
  GGAAACCACA GACGTTTATG TATAAGCTTA GGAATCATTG CTTCCTGCTT TGCAATGCAA
  TCCCCACATC TAACACACTT TCTCTAGCTT TTACTTCCCC CTGAAATGCG GGAACAAGGT
  R
  GCCCATCAGG AACTAGGCAC CTAAGTCTAG TTCTGTTATT CTTCCTTGGT ATATCCAAGT
  CTAGTCCTGC CCCTCCCTCC AGGAGTTCTG TGGGTGTCTT ACCAAGGTCC AATCACTGCT
  TCCACCCACC TCCAGTAAAG GACAACGTGG CTGTGTTTCT GACACAGTCG TCAAGCAAGG
  GCCAGCCTGG GCTGGCAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47713010	NES11323728	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32789860					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47713010	NES11323728	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56706124 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21799	CpG island 21799	1410 bp distal
Gm31586	predicted gene, 31586	433 bp downstream
Gm47235	predicted gene, 47235	122 bp downstream
Rr679505	regulatory region 679505	1488 bp distal
Rr679506	regulatory region 679506	1709 bp distal
Rr679507	regulatory region 679507	608 bp distal
Tssr89736	transcription start site region 89736	1885 bp upstream