rs32789905 SNP Detail

Summary

• ID
  rs32789905
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85705685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGA GATTGGATAC CTTAGGATAT
  M
  CCCGGAAAAG TCTCGTGGGA CCCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46191876	mCV24067462	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C	A
ss145398693	ENSMUSSNP5244005	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss322752776	CHEV_8_87502955	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32789905					SNP	A	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85705685 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20738	CpG island 20738	10 bp distal
Cpgi20739	CpG island 20739	748 bp proximal
Junb	jun B proto-oncogene	308 bp upstream
Rr187033	regulatory region 187033	within coordinates
Rr382406	regulatory region 382406	834 bp downstream
Rr401033	regulatory region 401033	97 bp downstream
Rr401034	regulatory region 401034	822 bp upstream
Tssr78492	transcription start site region 78492	1258 bp downstream
Tssr78493	transcription start site region 78493	1149 bp downstream
Tssr78494	transcription start site region 78494	1030 bp downstream
Tssr78495	transcription start site region 78495	885 bp downstream
Tssr78496	transcription start site region 78496	451 bp downstream
Tssr78497	transcription start site region 78497	427 bp downstream
Tssr78498	transcription start site region 78498	69 bp downstream
Tssr78499	transcription start site region 78499	1131 bp upstream
Tssr78500	transcription start site region 78500	1147 bp upstream
Tssr78501	transcription start site region 78501	1295 bp upstream
Tssr82216	transcription start site region 82216	1506 bp upstream
Tssr82217	transcription start site region 82217	1168 bp upstream
Tssr82218	transcription start site region 82218	1056 bp upstream
Tssr82219	transcription start site region 82219	1031 bp upstream
Tssr82220	transcription start site region 82220	976 bp upstream
Tssr82221	transcription start site region 82221	940 bp upstream
Tssr82222	transcription start site region 82222	913 bp upstream
Tssr82223	transcription start site region 82223	593 bp upstream
Tssr82224	transcription start site region 82224	516 bp upstream
Tssr82225	transcription start site region 82225	332 bp upstream
Tssr82226	transcription start site region 82226	1941 bp downstream
Tssr82227	transcription start site region 82227	1998 bp downstream