rs32790310 SNP Detail

Summary

• ID
  rs32790310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156267042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAT GGGCTGGAGG AGTAGTTTAA
  Y
  AGGACAGTAT GCCACAAAGC CTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45194171	mCV23089497	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145796607	ENSMUSSNP1231363	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320072192	CHEV_1_158369603	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs32790310					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156267042 () rs orientation: forward

Symbol	Name	Function Class
Rr31351	regulatory region 31351	1382 bp distal
Rr396421	regulatory region 396421	1857 bp downstream
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	223 bp upstream
Tssr14442	transcription start site region 14442	153 bp upstream
Tssr14443	transcription start site region 14443	1910 bp downstream
Tssr14444	transcription start site region 14444	1928 bp downstream