rs32790578 SNP Detail

Summary

• ID
  rs32790578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56706737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAGAGCC AGGACTTAGC
  TGGTCACCGT CGAAGGTCTC TGCAGGTGAG CAGTCTTGGG CTGTAATCAT CCAGGACGTG
  GAGCAGCAAT TGCTGCTTTT GTATACACTG GACACTTGTT GTCCCTTGGA CCAGGAGGAA
  GGCTTTGCCA GCCCTCTGAG CCTCACCCAG GGGAGACTTT GCTACTTCCA CCAGGCTGAA
  R
  CATTAAGGTT TTTGACATGG CTCAACCTAC GTCAACAATG CGCAGTCACC CAATACTTCA
  CTTCCTTCGG GCGGCTTCTG CTCTCCGCAC TCAAGCACTC CACAAGCCTC TGTTTCCTGG
  GTCAAAGAAA ATGGTGAAGT TCAGAGGGTT CAGAGAAATA TCACAGCAAG CTAGGCTGTC
  TACCCTGTGT TTATAAATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47713022	NES11323734	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32790578					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47713022	NES11323734	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56706737 () rs orientation: forward

Symbol	Name	Function Class
Gm31586	predicted gene, 31586	1046 bp downstream
Gm47235	predicted gene, 47235	within coordinates
Rr679507	regulatory region 679507	1221 bp distal