rs32792539 SNP Detail

Summary

• ID
  rs32792539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63071220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCA TATTCTGAGG TCACCAGCTA
  Y
  CGCTGCCTTG GAAAATGAAG CTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45695906	mCV22655767	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss146440169	ENSMUSSNP1322353	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss321144509	CHEV_4_62814017	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32792539					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63071220 () rs orientation: forward

Symbol	Name	Function Class
Ambp	alpha 1 microglobulin/bikunin precursor	within coordinates
Rr593477	regulatory region 593477	1643 bp distal
Rr593478	regulatory region 593478	1180 bp proximal
Tssr37529	transcription start site region 37529	1500 bp downstream
Tssr37530	transcription start site region 37530	391 bp downstream
Tssr37531	transcription start site region 37531	330 bp downstream
Tssr42025	transcription start site region 42025	355 bp upstream
Tssr42026	transcription start site region 42026	313 bp upstream
Tssr42027	transcription start site region 42027	297 bp upstream
Tssr42028	transcription start site region 42028	277 bp upstream
Tssr42029	transcription start site region 42029	1147 bp downstream
Tssr42030	transcription start site region 42030	1297 bp downstream
Tssr42031	transcription start site region 42031	1807 bp downstream
Tssr42032	transcription start site region 42032	1854 bp downstream