rs32792872 SNP Detail

Summary

• ID
  rs32792872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27750000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCGGTTCC TAGCTGGCTG GCTAGGTCCC TCTTACTCTT
  CCACTACTCC TTCCAAGTCC AGGAATGTGC GCTGTGCAGC CGCTGCTCTG ACTCCTAAAA
  R
  CTGTAAAACT GTAAAAGCTG TAGAAACGTT AAGAATGGCG AAGGATCAGC CCACCCTTTC
  TTCTCTGAGG ATCGGCCTGG GATCGAGAGG TCACATCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46192608	mCV24519082	ABI	CRAMUS_MOUSE	f	SNP		A	A			A		G
ss51947121	NES14964415	PERLEGEN	MM_PANEL2	f	SNP	A			A	A		A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32792872					SNP	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51947121	NES14964415	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27750000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20220	CpG island 20220	within coordinates
Eif4ebp1	eukaryotic translation initiation factor 4E binding protein 1	355 bp upstream
Rr186444	regulatory region 186444	within coordinates
Tssr76776	transcription start site region 76776	349 bp upstream
Tssr76777	transcription start site region 76777	360 bp upstream
Tssr76778	transcription start site region 76778	423 bp upstream
Tssr76779	transcription start site region 76779	457 bp upstream
Tssr76780	transcription start site region 76780	525 bp upstream
Tssr76781	transcription start site region 76781	1451 bp upstream