rs32793359 SNP Detail

Summary

• ID
  rs32793359
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58999670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAGAGGA TGGCCTAGTT
  GGCCATTAGT GGGAGGAGAG ACCCTGGTAT TGCGAAGATC ATATGCCCCA GGGGAATGCC
  AGGGCCAGTA ATCATCGGGA GAGGGTGGGT TGGGGAGTAG GGCGGGGGAG GGTATAGGGG
  ACTTTCAGGA TAACATTCGA AATGTAAATG AAGAAAATAT CTATTTAAAA AAATGAAATT
  W
  AAAAAATGTC AGTATCAATT TATATGGGTA CCATAAAACC TCCACATCCT AACTCAACTT
  TCCCCAATCT CCCACCAAAC TTGCTCTATT ACTACTATTA CTAGCTTTTT AAAAGACTCA
  TTTTTATTTT ATATATTTTG CCCGTATGTA TGTGAAGGTG CCACGTCCTC TGGAATTGGA
  GCTACAGAAA GCTGTGAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49400925	NES12799893	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32793359					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49400925	NES12799893	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58999670 () rs orientation: forward

Symbol	Name	Function Class
Gm70794	predicted gene, 70794	271 bp downstream
Gm70797	predicted gene, 70797	537 bp downstream
Rr371350	regulatory region 371350	1067 bp downstream
Rr411538	regulatory region 411538	760 bp proximal
Rr411539	regulatory region 411539	1439 bp proximal
Trak2	trafficking protein, kinesin binding 2	within coordinates
Tssr11793	transcription start site region 11793	1995 bp downstream