rs32793929 SNP Detail

Summary

• ID
  rs32793929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:157335286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGTGCCTGCC AACTGTGACA AATGAGGACT TGGCACAGAG TGGTGAGCAA GCGGTGGCTG
  TGTGGCTTCT GTTCCCAAGG TTTATATCCT GAAGTTGGGT CCAGAGTTCC TGCTATTTGC
  CGAGTTCATA AACCATGTGT TTACAGGTTG GTGATTTTCC TTCCTTTTCT TCCTTTCTTT
  TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT
  TCCTTCCTTC CTTCCTTCCT TCCTTCCTTC CTTCTTCCTT CCTCCCTCCC TCCCTCTCTC
  Y
  CTCCCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTTT CTCTCTTTCT TTCTTTGGAG
  ACTTTTTTTT TCTGCTCACC AGCTTTGCAG GAAACCTCAA AAGGGACCAC CTGTTGCCTA
  CCTGGAGTGC AGTTAATGTT TTGGCCAACA GATATTTTTA ACTCCCACCT CTCTGCTGGG
  AAAACCTAGG CAAACAAAGT GGAAGAAGTG ATGGCCCCTG TGGAATTTGC AGCTCAGTAG
  GAAAAACAGA TGTTACGTAC GAGGGGAGGA GTGACCGCTG GGCTGGGAGA AGAGAGAGCT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45195516	mCV23079330	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs32793929					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157335286 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm15486	predicted gene 15486			within coordinates
Rr421396	regulatory region 421396			1451 bp distal
Rr421397	regulatory region 421397			896 bp distal
Rr421398	regulatory region 421398			176 bp distal
Rr421399	regulatory region 421399			212 bp proximal
Sec16b	SEC16 homolog B, endoplasmic reticulum export factor			Intron
				Noncoding-Transcript-Variant
Tssr9592	transcription start site region 9592			940 bp downstream
Tssr9593	transcription start site region 9593			905 bp downstream