rs32794280 SNP Detail

Summary

• ID
  rs32794280
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58998887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGGGTG ACGCTCAGGA
  TGCAGGCATG TTTACTATAA ACATCTTTAT AAACACATGC AGCTCCGCAT ATCTAAGACA
  TGTAAGTATT TTAATGTAAT TCTACCACAC AAAAGAATTT TCAATTATAT TTGTCATAAA
  CCTAAGCCTT GTTTTGCAAA GCCAATTGTC AAAGATCTTT AGAATTTTAA GACAAGATTT
  K
  TTTTTTATTT TTATGTGTGT AAGTGTTTTA CCTGGTTTGT GCATCCCATG CATGCCTGGT
  GCCCACAGAG CTCAGAAGAG GATACCAGAT GCCCTAGAGC TGGAGTTACA GACTGTCGTG
  AGCCACTGGG CTGGGAATGG AACTCTTAAC TGCTGAGTCA TCTTTCTAGT CCCTAATGTT
  ACTTTTTGAG TGAAATTTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49400941	NES12799985	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32794280					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49400941	NES12799985	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58998887 () rs orientation: forward

Symbol	Name	Function Class
Gm70794	predicted gene, 70794	1054 bp downstream
Gm70797	predicted gene, 70797	within coordinates
Rr371350	regulatory region 371350	284 bp downstream
Rr411537	regulatory region 411537	1482 bp distal
Rr411538	regulatory region 411538	1543 bp proximal
Trak2	trafficking protein, kinesin binding 2	Intron