rs32794282 SNP Detail

Summary

• ID
  rs32794282
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58998851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGACCA TCCAGAACTG
  CAGTACAGTT TAAAGAGGGC TGGGTGACGC TCAGGATGCA GGCATGTTTA CTATAAACAT
  CTTTATAAAC ACATGCAGCT CCGCATATCT AAGACATGTA AGTATTTTAA TGTAATTCTA
  CCACACAAAA GAATTTTCAA TTATATTTGT CATAAACCTA AGCCTTGTTT TGCAAAGCCA
  R
  TTGTCAAAGA TCTTTAGAAT TTTAAGACAA GATTTGTTTT TTATTTTTAT GTGTGTAAGT
  GTTTTACCTG GTTTGTGCAT CCCATGCATG CCTGGTGCCC ACAGAGCTCA GAAGAGGATA
  CCAGATGCCC TAGAGCTGGA GTTACAGACT GTCGTGAGCC ACTGGGCTGG GAATGGAACT
  CTTAACTGCT GAGTCATCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49400943	NES12799984	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32794282					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49400943	NES12799984	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58998851 () rs orientation: forward

Symbol	Name	Function Class
Gm70794	predicted gene, 70794	1090 bp downstream
Gm70797	predicted gene, 70797	within coordinates
Rr371350	regulatory region 371350	248 bp downstream
Rr411537	regulatory region 411537	1446 bp distal
Rr411538	regulatory region 411538	1579 bp proximal
Trak2	trafficking protein, kinesin binding 2	Intron