rs32794826 SNP Detail

Summary

• ID
  rs32794826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56977903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAGAAGG CCACTGGCTA
  CCTCTTCTGT TATCTACACT GAGCCAGCTG CCTCCTCTTC CTTGGGATTA TTCTCAAGTA
  GACTCTCTTT AAACGAGATG AGATCCACTC TGTAGCCTAG GCTGGCTTTG GACTCAAGGT
  CTTATTCCCT TTGCCTCCCA AATGATGAGA TGACAGGCAT TTATTTATCA CCATATAAAG
  Y
  ATTGTAAAGT TCTTATAAAT AACTAGGTTG TTGGCATAGT CATCCAGCTG CCAGAGAATC
  CTTTCCTGTT CATATCCTAC CTGATACCCA AGCTAACTCC CTTTCTTCAA TGACCTCCAA
  AATAAGTGGT TCTTGGGGGC TGGGCTGTAA CTAAATGGGA AGAGTGCTTG CCTAGCATGT
  ATGAAGTACT AGGTCTGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47714426	NES11307919	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32794826					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47714426	NES11307919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56977903 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21807	CpG island 21807	1309 bp proximal
Gm10658	predicted gene 10658	within coordinates
Rr368762	regulatory region 368762	1523 bp upstream
Rr401391	regulatory region 401391	1181 bp upstream
Rr679579	regulatory region 679579	33 bp distal
Rr679580	regulatory region 679580	542 bp proximal
Rr679581	regulatory region 679581	1313 bp proximal
Sin3a	transcriptional regulator, SIN3A (yeast)	1421 bp upstream
Tssr85282	transcription start site region 85282	1405 bp upstream
Tssr85283	transcription start site region 85283	1446 bp upstream
Tssr89752	transcription start site region 89752	1231 bp downstream
Tssr89753	transcription start site region 89753	1260 bp downstream