rs32794828 SNP Detail

Summary

• ID
  rs32794828
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56978553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAGCTTC ATCTGAGGGC
  TGCTCAAAAT GAGGAGACTT TTCTGGACTA GGTGATGAAT AGGGGACAAA TTTGCCATTG
  CTTTTCCCAA TCTATTCCCC AATCCAAGAT GCACCTTTGT TGCCAGTAAA CTCACCAGTC
  CAACAGCCTC TGTGCCTGCT ATGTGTGTGT GGCACTCTTT GTTCAGACTG CTAGCTAAAC
  R
  GAATTACTCA TGTTGAAATG ACTGTGGATC TACTTAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA TAGGGTTGGG AAAGACTTCG CCTTACTTCC TGCAGCAAGC
  ATCTGAGTGT TTGGAGGATA TCGTGAATAT TCCAGCCAGT TTAAAATTGC ACTAGATAGC
  AGACAGAGTG AAATACCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47714428	NES11307903	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32794828					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47714428	NES11307903	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56978553 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21807	CpG island 21807	659 bp proximal
Gm10658	predicted gene 10658	within coordinates
Rr368762	regulatory region 368762	873 bp upstream
Rr401391	regulatory region 401391	531 bp upstream
Rr679579	regulatory region 679579	683 bp distal
Rr679580	regulatory region 679580	within coordinates
Rr679581	regulatory region 679581	663 bp proximal
Rr679582	regulatory region 679582	1785 bp proximal
Rr679583	regulatory region 679583	1983 bp proximal
Sin3a	transcriptional regulator, SIN3A (yeast)	771 bp upstream
Tssr85282	transcription start site region 85282	755 bp upstream
Tssr85283	transcription start site region 85283	796 bp upstream
Tssr89752	transcription start site region 89752	581 bp downstream
Tssr89753	transcription start site region 89753	610 bp downstream