rs32794830 SNP Detail

Summary

• ID
  rs32794830
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56980160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTGGAAG GGTCGTGGGC
  GCGCTCTGGG GAGGCGCGGG CACCGTGGGC CCGCGGTTGT TAAGGACTCT GGGGGCGGGG
  GCAATGGCTG TATTTGCCGG AGGAGACTTG GGGCGGGAGA GGTTCCAGCC ACTAGCCTGG
  GAGCTGCCGG TGTGTCCGAA CACGGCATTT TAGCAAGTAC TCGGCTGCAG AACCGGCTAG
  R
  CTGCGGTCCG GCGTGGAGCG CTTGCTGAGT GTAGAAAAGC TCTAGGAACT CGGCGGATTC
  AATTCGCGGC CCCAGCTGAT CCCCTCGCAA ACATGGAGCT GCCTCCTTCC CCGCCCACCT
  CACGGCCGCG GCGGCTGCTC CCCCTCCCTG AGTAGTGTGT GTGCTGCCGG GGCTCCCTCT
  TCCGCGAGGT GCCGCTGCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47714430	NES11307861	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32794830					SNP	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47714430	NES11307861	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56980160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21807	CpG island 21807	within coordinates
Cpgi21808	CpG island 21808	1578 bp proximal
Gm10658	predicted gene 10658	910 bp upstream
Gm57026	predicted gene, 57026	866 bp upstream
Rr368762	regulatory region 368762	within coordinates
Rr401391	regulatory region 401391	775 bp downstream
Rr679580	regulatory region 679580	945 bp distal
Rr679581	regulatory region 679581	418 bp distal
Rr679582	regulatory region 679582	178 bp proximal
Rr679583	regulatory region 679583	376 bp proximal
Rr679584	regulatory region 679584	599 bp proximal
Rr679585	regulatory region 679585	679 bp proximal
Rr679586	regulatory region 679586	1972 bp proximal
Sin3a	transcriptional regulator, SIN3A (yeast)	within coordinates
Tssr85282	transcription start site region 85282	828 bp downstream
Tssr85283	transcription start site region 85283	800 bp downstream
Tssr85284	transcription start site region 85284	859 bp upstream
Tssr85285	transcription start site region 85285	982 bp upstream
Tssr89752	transcription start site region 89752	1014 bp upstream
Tssr89753	transcription start site region 89753	971 bp upstream