rs32794832 SNP Detail

Summary

• ID
  rs32794832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56980673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATAGGGA AAAGGAAATG
  CATCAGCGGG CGGGGAGGGG CGCGCCTGTC AGCCGGATGG CGGCTGCGGG CCGAGAGGCG
  GGGCACCGGA GCAAACTGCG TGCAGTGGCG GTGCAGGCGG GGAGGGCAGG CGCAGGGCCA
  GTTCTCGAAA TGCGCGGCCA TCTCTGCCTC CATTGCCTGG CCAAGACTGT TTACTATCTC
  Y
  TGCAGGGAGC TTGTGCAACC GGCCTGGAGG GGACCCGAGA GGGGCGGGGA CATTTCCTCT
  TCCACCCACT TTGGGTTCTC CAGAGGCTCC GCCTTCTCTT GTCTTTCACT GGTTGGATTC
  GAGTCCCTCT TTCCCTTCTC GTGTATGCAT TGGATGATAT TCTCTAGAGC TCCGCCTATC
  GGGAGGTTGG ACTGGAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47714432	NES11307862	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32794832					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47714432	NES11307862	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56980673 () rs orientation: forward

Symbol	Name	Function Class
2700012I20Rik	RIKEN cDNA 2700012I20 gene	1814 bp downstream
Cpgi21807	CpG island 21807	within coordinates
Cpgi21808	CpG island 21808	1065 bp proximal
Gm10658	predicted gene 10658	1423 bp upstream
Gm57026	predicted gene, 57026	353 bp upstream
Rr368762	regulatory region 368762	within coordinates
Rr401391	regulatory region 401391	1288 bp downstream
Rr401392	regulatory region 401392	1785 bp upstream
Rr679580	regulatory region 679580	1458 bp distal
Rr679581	regulatory region 679581	931 bp distal
Rr679582	regulatory region 679582	314 bp distal
Rr679583	regulatory region 679583	within coordinates
Rr679584	regulatory region 679584	86 bp proximal
Rr679585	regulatory region 679585	166 bp proximal
Rr679586	regulatory region 679586	1459 bp proximal
Rr679587	regulatory region 679587	1960 bp proximal
Sin3a	transcriptional regulator, SIN3A (yeast)	within coordinates
Tssr85282	transcription start site region 85282	1341 bp downstream
Tssr85283	transcription start site region 85283	1313 bp downstream
Tssr85284	transcription start site region 85284	346 bp upstream
Tssr85285	transcription start site region 85285	469 bp upstream
Tssr89752	transcription start site region 89752	1527 bp upstream
Tssr89753	transcription start site region 89753	1484 bp upstream