rs32795624 SNP Detail

Summary

• ID
  rs32795624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56981186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGGTAA GCTAGGAGGA
  GACGTTCTCC TCCCTGCCCC CCCTTTCTCG TGAGCGCGCT CAGCACATGG TTGAGGCCCT
  TTTAGCTCCC TGCAACTTCC CTCCCGCCCG GAAGTCTCAG GCTCCGCGCC CTTAGTTAGG
  GGGGCGGGGA AAGCCTTGGA GGCACACAAA GATTCTTCCG AGTCTAGGGA TCGGCTAGCC
  Y
  TCGAGGTGAA GCCCGACAAT TGCGCTGTTA CTCCAGAAAG CATCGCTCCA GGGCTGCTGC
  ACGGAGGGGA GGGAATGAGT TCTACCCTCC AGCCCGATCA ACTTTTGCTG TTTTTCTCCG
  TGCCCCTTGA CTTCCTTAAA TTTAAGTTTC AGAAAGCTTG GACATTGGCC GCATCCTTAA
  TTCCTTGTGC AAGGCAATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47714434	NES11307863	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32795624					SNP	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47714434	NES11307863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56981186 () rs orientation: forward

Symbol	Name	Function Class
2700012I20Rik	RIKEN cDNA 2700012I20 gene	1301 bp downstream
Cpgi21807	CpG island 21807	within coordinates
Cpgi21808	CpG island 21808	552 bp proximal
Cpgi21809	CpG island 21809	1773 bp proximal
Gm10658	predicted gene 10658	1936 bp upstream
Gm57026	predicted gene, 57026	within coordinates
Rr368762	regulatory region 368762	within coordinates
Rr401391	regulatory region 401391	1801 bp downstream
Rr401392	regulatory region 401392	1272 bp upstream
Rr679580	regulatory region 679580	1971 bp distal
Rr679581	regulatory region 679581	1444 bp distal
Rr679582	regulatory region 679582	827 bp distal
Rr679583	regulatory region 679583	150 bp distal
Rr679584	regulatory region 679584	406 bp distal
Rr679585	regulatory region 679585	326 bp distal
Rr679586	regulatory region 679586	946 bp proximal
Rr679587	regulatory region 679587	1447 bp proximal
Rr679588	regulatory region 679588	1932 bp proximal
Sin3a	transcriptional regulator, SIN3A (yeast)	within coordinates
Tssr2884	transcription start site region 2884	1533 bp upstream
Tssr85282	transcription start site region 85282	1854 bp downstream
Tssr85283	transcription start site region 85283	1826 bp downstream
Tssr85284	transcription start site region 85284	148 bp downstream
Tssr85285	transcription start site region 85285	30 bp downstream
Tssr89753	transcription start site region 89753	1997 bp upstream