rs32795897 SNP Detail

Summary

• ID
  rs32795897
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58998180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGTCTGT ACTTCTGGGA
  AGAAACAAAC CCAGCCCAGC AAGCCAGAAA GCACTTTCAA TGTTGAGTGG CAAAACTAAG
  ATACTAGATT ACAAAAGGGG CTGGCAGCTG AGCTTCTAGT GCCACAGAAT ACTAACAACT
  AACTAAACAG ATGCAATCAT GCTGTCAGGC TTAAGGCTGT CCTGGGAAAT CAAACAGCTC
  M
  GACCCCTTGA GAACAGCAAT TTCAGGGCAG CAGTAAGGAA TATCAAAATG CTAAACAGAA
  AGAGTGAGAA GAAATGTATG CTCATCTATT CTCTATATCT TTTAAGAATA AAAATAATTT
  GGTTTTGGTA TTAAAATCAT CACAAATCCT TCAGTTACGT AAAAACCGCA GAACTCGGAG
  GTTTTAGAAG CAGAAGCTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49400959	NES12799975	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32795897					SNP	C	C	C	C	C	C	A	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49400959	NES12799975	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58998180 () rs orientation: forward

Symbol	Name	Function Class
Gm70794	predicted gene, 70794	1761 bp downstream
Gm70797	predicted gene, 70797	438 bp upstream
Rr371350	regulatory region 371350	within coordinates
Rr411537	regulatory region 411537	775 bp distal
Trak2	trafficking protein, kinesin binding 2	within coordinates