rs32796083 SNP Detail

Summary

• ID
  rs32796083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25690318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGGGCACGCA CACATCCTTT TTAAATTTTT CTTTTTCTTT TTCTTTTTTA AGTTAAAACC
  AAAAAGGTAG AAAACTCAAG TTTTGTTACC TTGGGGTTTG GCCTCGGGTT CTGCCAATCC
  CGGTGATGAA TCACAAGACT CCTTGAGAGG CGATCTGATT GGAGTTTCAG CTTCAGGAGT
  CTCAAAATTA CCTTCAGAAT CCGAGCTGCC GAGGGGGAAA AACGAGGCAT TACCACAGTC
  AACGGTATTT CCAACTGCCT TTAAAACGTA CTCAGCCACC AAAGTGCAAG TACAGCGCCT
  Y
  TAACTTTACA ACCAACCAAT CCTCAACCCA GCCTGAGAAC GGCTGCAGCA TTTTCAGCGA
  TGCCCAGCAT CCTAGCTCCC CGAAATCTCT TTCGTCCTCT GAAGCTTCTC ACCAGGACCG
  TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTGTCAT CGCTGCCTTT CACACGCACA
  GACACACACA CAAAAAGACT TCCCAATCAA CCCTTTCCAG GGGCGTAAAA ATTAATATCG
  CCCCACCCCC CAAACTAAGC CAATTCTAGC TATACTGTTC TTCTCCGTAG GCCTCTACCT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46192652	mCV23336705	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32796083					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25690318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20180	CpG island 20180	253 bp proximal
Rr661072	regulatory region 661072	1347 bp distal
Rr661073	regulatory region 661073	1137 bp proximal
Tacc1	transforming, acidic coiled-coil containing protein 1	within coordinates
Tssr76673	transcription start site region 76673	1446 bp downstream
Tssr76674	transcription start site region 76674	156 bp upstream
Tssr76675	transcription start site region 76675	1152 bp upstream
Tssr80693	transcription start site region 80693	1013 bp downstream
Tssr80694	transcription start site region 80694	1047 bp downstream
Tssr80695	transcription start site region 80695	1234 bp downstream
Tssr80696	transcription start site region 80696	1483 bp downstream