rs32796686 SNP Detail

Summary

• ID
  rs32796686
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58997735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATTCCCA ACAGTAGCAA
  AATTAGTTAT GAAGTAGCAA CAAAAATAAT CTCATGGTTG GGATGGGGGT CACCACAAGA
  TGGGGAGCTG TGTTAAAGGC TTGCAGCTTT AAGAAGGTTG AGAATCACTG CTCTTGATAT
  TCTGCTGACA TGTGAGTCAC AGACACATTA AAATATTAGC TCATAGGGTA CTTTTGTCAA
  M
  ATTTACATCA CAGGATATTA ATAAAATCAT CAGTTACCTC AAAATCTTTT TAAACAAGGA
  AAATGTGTAT CTGTTTAACT ACAGCAACAG ATAAAATTGA TAAAATGGTA AAAAATGGAC
  AGAGGTCTTT AAAACATGGG TAACACAGAG TAAGTACTAT AACATGCTTG TGGAGTCCCT
  TAACCAAAAC CAGAAAACAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49400969	NES12799970	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32796686					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49400969	NES12799970	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58997735 () rs orientation: forward

Symbol	Name	Function Class
Gm70797	predicted gene, 70797	883 bp upstream
Rr366913	regulatory region 366913	1985 bp downstream
Rr371350	regulatory region 371350	within coordinates
Rr411536	regulatory region 411536	1958 bp distal
Rr411537	regulatory region 411537	330 bp distal
Trak2	trafficking protein, kinesin binding 2	within coordinates