rs32796689 SNP Detail

Summary

• ID
  rs32796689
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58997414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACCACCA GGGAATATGT
  GGAAAGGTCA TTCAGGGTTG AAGGTCAAAG GAGGCTAAGC TGCTCTGCAT GAGACTAGGA
  GAGCAACTGG CCTTCCTTTT TCCTAAGCAG AGAGAACAGA AATCAGCACA GGTAGCAGCT
  CAGAGGCCAC AGGACTACCA GGACTGCAGA GAGCTTAGGG AGGGTTTTGG CTGTCCATTT
  M
  GTCTTGGTGG GTCTAGAGCA GCAGTCCTCA ATCTGTGGGT CATGACCCTT TGTGGAGGCT
  GTTAAATTAC TCTTTTTAGG GGCTGCATAT CAGATATCCT GCATGTCAGA GAGTTACATT
  ATGATTCCCA ACAGTAGCAA AATTAGTTAT GAAGTAGCAA CAAAAATAAT CTCATGGTTG
  GGATGGGGGT CACCACAAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49400973	NES12800043	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32796689					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49400973	NES12800043	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58997414 () rs orientation: forward

Symbol	Name	Function Class
Gm70797	predicted gene, 70797	1204 bp upstream
Rr1077	regulatory region 1077	1842 bp distal
Rr366913	regulatory region 366913	1664 bp downstream
Rr371350	regulatory region 371350	within coordinates
Rr411536	regulatory region 411536	1637 bp distal
Rr411537	regulatory region 411537	9 bp distal
Trak2	trafficking protein, kinesin binding 2	within coordinates