rs32797507 SNP Detail

Summary

• ID
  rs32797507
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58997141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACTTGG CAAAAGAGTT
  ACATATGGCA TGTAGTATAA AAGTTACATT TTAATCAAAG TTTTTCAAGA CAGATTTCTT
  ACAAGTTTAA TATGCAATAT TTAAATAGCT GTAAGACTAT TTAACTGAAA AAGTTGTTAC
  TAAAAAGCAA CTTTTATCAT TAAATTTTAC TAAGTCCACA CTGTCCACTG CTAAACAGTA
  R
  AGCTTCGATC AGGAGAAAGT AGTTGGGAAA TGTTTAGTAA GTGCCTGGGC CAAGACTGCC
  TTGCAGCCCA GCCCAACCAC CAGGGAATAT GTGGAAAGGT CATTCAGGGT TGAAGGTCAA
  AGGAGGCTAA GCTGCTCTGC ATGAGACTAG GAGAGCAACT GGCCTTCCTT TTTCCTAAGC
  AGAGAGAACA GAAATCAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49400981	NES12800037	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32797507					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49400981	NES12800037	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58997141 () rs orientation: forward

Symbol	Name	Function Class
Gm70797	predicted gene, 70797	1477 bp upstream
Rr1077	regulatory region 1077	1569 bp distal
Rr366913	regulatory region 366913	1391 bp downstream
Rr371350	regulatory region 371350	within coordinates
Rr411536	regulatory region 411536	1364 bp distal
Rr411537	regulatory region 411537	within coordinates
Trak2	trafficking protein, kinesin binding 2	within coordinates