rs32797509 SNP Detail

Summary

• ID
  rs32797509
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58996871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGTCTT TCTTTCCTCT
  ATCTCCTCAG TCTCACTGTC ATGAATGGTT AGCAACTGGA TGACCATCCA GTACTTTTGG
  TAGTCAAGTT ATTTAGGGAT AGTCATATGA TAGCTTATTC AAAGGAAATG GGATGGAAAA
  TAATGTTAAA TATAGACTTC AAATGGGCAA ACTAGTGTCG CATTCAGCAA ACAGTGGTGC
  M
  TTCTTTTTTT TCAAGAAAAA CAATTTGATG TTTAAATTCT ATCCTGTTAA ATAGGCATTA
  TCTTCTCTGT GCCACTTGGC AAAAGAGTTA CATATGGCAT GTAGTATAAA AGTTACATTT
  TAATCAAAGT TTTTCAAGAC AGATTTCTTA CAAGTTTAAT ATGCAATATT TAAATAGCTG
  TAAGACTATT TAACTGAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49400983	NES12800035	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32797509					SNP	C	C	C	C	C	A	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49400983	NES12800035	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58996871 () rs orientation: forward

Symbol	Name	Function Class
Gm70797	predicted gene, 70797	1747 bp upstream
Rr1077	regulatory region 1077	1299 bp distal
Rr366913	regulatory region 366913	1121 bp downstream
Rr371350	regulatory region 371350	within coordinates
Rr411536	regulatory region 411536	1094 bp distal
Rr411537	regulatory region 411537	256 bp proximal
Trak2	trafficking protein, kinesin binding 2	within coordinates