rs32797862 SNP Detail

Summary

• ID
  rs32797862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56963763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACTTGA ACTCAGGATT
  TCTAGAAGAG CAGTCATTGC TCTTAACTGC TGAGCCATCT CCCCAGCCTT TTATTTTATG
  TAATAGGTGT TTTGTCTATG CACTACATAC ATGCAGTGCT CAGAGAGTCC AGAAGAGGGC
  ATTAACTCCT CTAGAACCAT AGTTATAAAA TACTCACCCA TACAGAGATG ATATGGTTGG
  Y
  TTGAGGACCT TGCTGAATAA GGAGAGCTAA GACAAGGCTC ATATGAATAC TTGTAATCTT
  AGTACTTGGG CGGTGGAGAC AGAGTTCAAG GACAGGCTGG ACTATAGTGA GTCTGAGTCT
  ATATGAGTGA GATCCTGTTT CAGTCTGTAC TTCAGAGATC CTATTTGGAA GACAAGTAGA
  GGAAGACAGA CATGCTTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47714372	NES11308554	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32797862					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47714372	NES11308554	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56963763 () rs orientation: forward

Symbol	Name	Function Class
Gm10658	predicted gene 10658	418 bp downstream
Ptpn9	protein tyrosine phosphatase, non-receptor type 9	within coordinates
Rr195851	regulatory region 195851	within coordinates
Rr212037	regulatory region 212037	within coordinates