rs32798404 SNP Detail

Summary

• ID
  rs32798404
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58996652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGCCATG CTTTTAAAAC
  TACACTTCTC AACAGGAATT TCATTTGACG CTTGATGGCA CAGAGTCAAG GACAAGGGGT
  TATATTAAAA TGCTTAAAAC AACCAGATGT GGTGGCACAT GCCTGTAATT CCAGCCCTCA
  GGAAGCAGAG GTGACAGGAG GGGGAGAGGC TGGAGGAAGA TACTAAACCA GACTTGCCTG
  M
  TGTTTATACA TCTTTAGATT CCTGTCTTTC TTTCCTCTAT CTCCTCAGTC TCACTGTCAT
  GAATGGTTAG CAACTGGATG ACCATCCAGT ACTTTTGGTA GTCAAGTTAT TTAGGGATAG
  TCATATGATA GCTTATTCAA AGGAAATGGG ATGGAAAATA ATGTTAAATA TAGACTTCAA
  ATGGGCAAAC TAGTGTCGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49400989	NES12800029	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32798404					SNP	A	A	A	A	A	A	C	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49400989	NES12800029	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58996652 () rs orientation: forward

Symbol	Name	Function Class
Gm70797	predicted gene, 70797	1966 bp upstream
Rr1077	regulatory region 1077	1080 bp distal
Rr366913	regulatory region 366913	902 bp downstream
Rr371350	regulatory region 371350	within coordinates
Rr411536	regulatory region 411536	875 bp distal
Rr411537	regulatory region 411537	475 bp proximal
Trak2	trafficking protein, kinesin binding 2	within coordinates