rs32798726 SNP Detail

Summary

• ID
  rs32798726
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56964540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGGCCA CTGCATTACC
  AGTTCCCTTT GCTCTCCATT TCCTCCTTCT TTTGATGGCT CTTCTGTTCA TTAATATCTC
  TACCTGTAAG GGAACAGAAA GATGGTTGAA ACATAAGGCA GGAAGTTCTG AATAAAGGAT
  TGTTTTTGAA ATTTGGCAAT TCTGCCAAAT GTAAGGAATT TCATAGTTTA TTAGTTTCAT
  Y
  ATTAATTATA ACCTTTTTCA GATAGGGAAG AAAAGCGATG CTCCCTCAGT TCCCGTCCTC
  AGAGCATTGT CAACAGCCAC CTGTAGTTGG GAGAATTGTC TTCCCCACTC CTGTGTCAGC
  CAAGGGCCCT TCGTCGAAAG AAACTGAGCA GTGGCCAAGG TCTAGGCCTC AGTGTGGATT
  TGCTACTATA TGTAGGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47714376	NES11308529	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32798726					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47714376	NES11308529	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56964540 () rs orientation: forward

Symbol	Name	Function Class
Gm10658	predicted gene 10658	within coordinates
Ptpn9	protein tyrosine phosphatase, non-receptor type 9	within coordinates
Rr195851	regulatory region 195851	540 bp distal
Rr212037	regulatory region 212037	611 bp distal