rs32798728 SNP Detail

Summary

• ID
  rs32798728
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56965826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCTCTTG AGTAGATCCT
  GAGTTCAAAT CACAGCAGCC ATATGGTGGC TCACAACCAT CTATAATGGG ATCTGATGGC
  CTCTTCTGGG TGTGTCTGAA GACAGCTACA GTGTACTCAC ATACATAAAA TAAATAAATA
  ACTCTTTTTT TATTTTAAAA GAGTGGCATT AAAGAGAAGT AAAAAATTTC AACATTGGGA
  M
  TCTGTATGCT AAGCCATGCT TCTTATCCTT CTGCAGAGGA GGCTGAGGCA GGATTACAAG
  GTGGAAAATA GCTTGGACTG CACAGTACGA ATCTTGTCTC AGAAAAACTA CATTGAGGGA
  CTGGAGAGAT GATGGTTCAG CTGTTAGAGT ACTTTATACT CAATCATGAG GACGAGTGTT
  CAGACTGTAG CGCCCATGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47714378	NES11308385	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32798728					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47714378	NES11308385	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56965826 () rs orientation: forward

Symbol	Name	Function Class
Gm10658	predicted gene 10658	within coordinates
Ptpn9	protein tyrosine phosphatase, non-receptor type 9	within coordinates
Rr195851	regulatory region 195851	1826 bp distal
Rr212037	regulatory region 212037	1897 bp distal