rs32798958 SNP Detail

Summary

• ID
  rs32798958
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3676504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCACAAC CATCTGTAGC
  TTCAGTTCTA AGGGATCTAT TGCTCTTCTC TGGCTTCTCT GGGCACCAGG AACACTCATG
  GTGTGCAGAC ATACATACAG GTAAAGCAGC CATACACATA AAACAAATCT TTTAAAGTGT
  TTAGATAAAT AAAGTTAAAA AGTTAATTTT CTTTCACTTG GGGCAAGTGA GGTAGGATCT
  R
  TGTAGTAGTG TATTGTGCAC ATGTGGTTCG TGCATGGGTT TGTTGTAGTG TATGTGTGCA
  CGTGTGGTGT GTGCATGGGT CTGCATAGTA GTGTATGTGT GCACGTGTGG TGTGTGCATG
  CTCATATGAA GACTGGAGGT CAACACCAGG CGTCTTTCTG TAGTGCTCTC TACCTCTATT
  TTTGAGACAT GGCCTGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46193223	mCV22852513	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss148547084	ENSMUSSNP6566059	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32798958					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3676504 () rs orientation: forward

Symbol	Name	Function Class
Pcp2	Purkinje cell protein 2 (L7)	959 bp upstream
Rr658952	regulatory region 658952	1588 bp proximal
Tssr80204	transcription start site region 80204	1927 bp upstream
Tssr80205	transcription start site region 80205	1837 bp upstream
Tssr80206	transcription start site region 80206	1578 bp upstream
Tssr80207	transcription start site region 80207	1521 bp upstream
Tssr80208	transcription start site region 80208	1490 bp upstream
Tssr80209	transcription start site region 80209	1462 bp upstream
Tssr80210	transcription start site region 80210	1292 bp upstream
Tssr80211	transcription start site region 80211	1251 bp upstream
Tssr80212	transcription start site region 80212	1216 bp upstream
Tssr80213	transcription start site region 80213	1207 bp upstream
Tssr80214	transcription start site region 80214	956 bp upstream
Tssr80215	transcription start site region 80215	924 bp upstream