rs32799424 SNP Detail

Summary

• ID
  rs32799424
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185047711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAGGCTT TAATCCCAGG
  GGGTGCACAA GAAAGAGAGA GAGAGAAAGA GAGAGAGAGG AAGGGAGGGA ACACAAACAA
  CAAAACCTTA ACAGCAACAA CGTAGAAACT GCAAACTCCA ACAGCATCCT CATGGTCATG
  GGGTTGAGGG AACATCAGCC CTCTGAATGC CTCACTCGCT CGCTGTCACA CTGCGGACTT
  R
  GCCTTAACCC CGTGCTCCTG TCTCAGGCTT GCTCACTGCT GGCTCATCCA GCCCAGCAAC
  AGTGTGACTT TCTACTCCCA GCACTGGGGA GGCTGAGGCA GGAGGACTGC CGTGAATGTG
  AGACTGTGCC AGAGCAGCCA GTGCTCACTG GTGAGACAGA CAGAGCTGAG AGCGAGGAGG
  ACATCGGGAC AAACCTGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46730422	NES10645951	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A	G	A	A	G		G	A	G	A		A
ss146427485	ENSMUSSNP1638800	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss320174713	CHEV_1_187139393	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32799424					SNP	G	G	A	G	A	G	A	G	A	A	G	G	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46730422	NES10645951	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185047711 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	1715 bp downstream
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir215	microRNA 215	1822 bp downstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	1822 bp distal
Tssr10601	transcription start site region 10601	1840 bp downstream