rs32799947 SNP Detail

Summary

• ID
  rs32799947
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185044336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGATAAA AGTGGGTGAA
  ACCACTTATC ACTCTGTAGT CTGTTTCCAT TTTAATGCTG TATTTCACAG AGCAATAAGT
  CAGACCATAC TAGAACTTTG TACTCAGAGG CCTTATCTGT CACGCATTCC GTGTTCCTGC
  TTCGGTTTCC ATCAGGGAAA ACCCAGGCAG TGGGGCAGCT CTGACGGCAG CCAATCACCC
  R
  GGCTCTGCTA TCAGCAGCAT GTGCTATTTA GCCGAGAAGC AGGAAGCACT CAGGACTTCC
  AGGTAAGGAG CCGCTGCTGT CCTCTTGGTC CTCTGTTCTC TCTTTATAAG CAAAAGGCAC
  AGGACAGGAT CTCTGCTGGA AGTGACCGTG GAAAGAACGA GGTAAGAGGC TAAGAGTTCC
  TGTCTGTTGT CTAAATGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46730341	NES10646152	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G	A	G	G	A		A	G	A	G		G
ss146427369	ENSMUSSNP6976519	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss320174680	CHEV_1_187136018	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32799947					SNP	A	A	G	A	G	A	G	A	G	G	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46730341	NES10646152	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185044336 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	48 bp upstream
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir194-1	microRNA 194-1	1180 bp upstream
Mir215	microRNA 215	1442 bp upstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	1180 bp proximal
Rr425362	regulatory region 425362	1420 bp distal
Rr425363	regulatory region 425363	within coordinates
Tssr10600	transcription start site region 10600	46 bp upstream
Tssr10601	transcription start site region 10601	1531 bp upstream