rs32799952 SNP Detail

Summary

• ID
  rs32799952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185044816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATTTAGGA TGCTTTCTTT
  ACTTACTGAA CATAAAGTCC ACAGGTTTCC AGAGGCTGGC TCTAAGCTAC CTTAGCGCGT
  AAGTCAACAG TGCTGGTGAC AACATACGTC TAAAATAAGG AAAGAAACGC CATCAACAGC
  TTCCTGTCTT CTCTAGGTGG CCAATGTTTC TAAATTTTAT CCATTTTATG TTAAAAAATA
  Y
  TTGTTGCCAG GAAGTGGTGG TTCACGCCTT TAATCCCAGC ACTTGGGAGG CAGAGGTAGG
  TGGATTTCTG AGTTTGAGAC CCGCCTGGTC TACAGAGTGA GTTCCAGGAC AGCCAGAGCT
  ATACAGAGAA ACCCTGTCTC CGAAAAAAAA AACAAAACAA AACTTGTTTT CATTAACCAG
  GGACTAGATT GCCACCTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46730347	NES10646156	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C	C	C	T		T	C	T	C		C
ss146427381	ENSMUSSNP2804551	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
ss320174683	CHEV_1_187136498	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32799952					SNP	T	C	T	C	T	C	C	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46730347	NES10646156	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185044816 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	within coordinates
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir194-1	microRNA 194-1	700 bp upstream
Mir215	microRNA 215	962 bp upstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	700 bp proximal
Rr425362	regulatory region 425362	1900 bp distal
Rr425363	regulatory region 425363	422 bp distal
Tssr10600	transcription start site region 10600	419 bp downstream
Tssr10601	transcription start site region 10601	1051 bp upstream