rs32801218 SNP Detail

Summary

• ID
  rs32801218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185045944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGACCC AGCCATGGAG
  ACTACGGAGC ACGGAGCTCT CAGCATCAAC GGTGTACAGG AGAATGACCT ATGATTTGAC
  AGACCGTGCA GCTGTGTATG TCTGTCATTC TGTAGGCCAA TATTCTGTAT GTCACTGCTA
  CTTAAAATCC GGACATCGGC AAACACCCTC TGAGCGCTGT GCAGCAGATC ACGGGAGAGT
  Y
  TGTAGCATGG CAGGAGAATG TGCTGACAAA ATAAAATGAG TGCTTCTGTG TACCTGAGAA
  AGCTGACGTC TATTTCATCT CACTCACCGA CTGCTCAATC TGTGTACATT TTCACTTTGA
  AAACAATTGT CAGTTCCACC AGTCTGCTGA AGTCTGAGGG TGTAGCTCAG TGGTAGAGTG
  TGTGTTGCTG AAAATTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46730353	NES10646051	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32801218					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46730353	NES10646051	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185045944 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	within coordinates
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir194-1	microRNA 194-1	362 bp downstream
Mir215	microRNA 215	55 bp downstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	55 bp distal
Rr425363	regulatory region 425363	1550 bp distal
Tssr10600	transcription start site region 10600	1547 bp downstream
Tssr10601	transcription start site region 10601	73 bp downstream