rs32801221 SNP Detail

Summary

• ID
  rs32801221
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185046002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAATGAC CTATGATTTG
  ACAGACCGTG CAGCTGTGTA TGTCTGTCAT TCTGTAGGCC AATATTCTGT ATGTCACTGC
  TACTTAAAAT CCGGACATCG GCAAACACCC TCTGAGCGCT GTGCAGCAGA TCACGGGAGA
  GTCTGTAGCA TGGCAGGAGA ATGTGCTGAC AAAATAAAAT GAGTGCTTCT GTGTACCTGA
  S
  AAAGCTGACG TCTATTTCAT CTCACTCACC GACTGCTCAA TCTGTGTACA TTTTCACTTT
  GAAAACAATT GTCAGTTCCA CCAGTCTGCT GAAGTCTGAG GGTGTAGCTC AGTGGTAGAG
  TGTGTGTTGC TGAAAATTTG GGGTATGTCA CAGTGGTCGA GTTTGTGTTG GTGAAGTGTG
  GGGATACAGC TCAGTGGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46730356	NES10646052	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	G	C	G	C	G	G	C		C	G	C	G		G
ss146427398	ENSMUSSNP587670	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
ss320174688	CHEV_1_187137684	CHEVERUD	SCREENING_POP	f	SNP												C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32801221					SNP	C	C	G	C	G	C	G	C	G	G	C	C	C	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46730356	NES10646052	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185046002 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	6 bp downstream
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir194-1	microRNA 194-1	420 bp downstream
Mir215	microRNA 215	113 bp downstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	113 bp distal
Rr425363	regulatory region 425363	1608 bp distal
Tssr10600	transcription start site region 10600	1605 bp downstream
Tssr10601	transcription start site region 10601	131 bp downstream